Publications

Mauricio Peñuela, Jenny Johana Gallo-Franco, Jorge Finke, Camilo Rocha, Anestis Gkanogiannis, Thaura Ghneim-Herrera, Mathias Lorieux (2022). Methylation in the CHH Context Allows to Predict Recombination in Rice. Int. J. Mol. Sci. 2022, 23(20), 12505;, 23(20).

Angélica M. Jaramillo, Santiago Sierra, Paul Chavarriaga-Aguirre, Diana Katherine Castillo, Anestis Gkanogiannis, Luis Augusto Becerra López-Lavalle, Juan Pablo Arciniegas, Tianhu Sun, Li Li, Ralf Welsch, Erick Boy, Daniel Álvarez (2022). Characterization of cassava ORANGE proteins and their capability to increase provitamin A carotenoids accumulation. PLoS ONE 17(1): e0262412., 17(1), 1-24.

Anestis Gkanogiannis, Luis Augusto Becerra, et al (2021). The diversity, origin and evolution of wild and landrace varieties of M.esculenta from RADSeq data. In Preparation.

Anestis Gkanogiannis, Luis Augusto Becerra, et al (2021). Two dense genetic maps and WhiteFly infestation QTLs from RADSeq and WGS data of two F1 M.esculenta populations. In Preparation.

Mathias Lorieux, Anestis Gkanogiannis, Christopher Fragoso, Jean-François Rami (2019). NOISYmputer: genotype imputation in bi-parental populations for noisy low-coverage next-generation sequencing data. In bioRxiv 658237.

Anestis Gkanogiannis, Dereeper Alexis, Szurek Boris, Zarate Carlos, López Camilo, Becerra López-Lavalle Luis Agusto, Ruiz Manuel (2018). The cassava genome hub. In Proceedings Plant and Animal Genome XXVI Conference, 2018 PAG, San Diego.

Becerra López-Lavalle Luis Agusto, Villafrade Rodriguez Zapata Fausto, Ovalle Tatiana, Ruiz Manuel, Anestis Gkanogiannis, Tohmé Joe (2018). Capturing next-generation genome wide molecular markers in cassava helps to untangle the crop's genetic improvement history. In Proceedings Plant and Animal Genome XXVI Conference, 2018 PAG, San Diego.

Villafrade Rodriguez Zapata Fausto, Ovalle Tatiana, Ruiz Manuel, Anestis Gkanogiannis, Becerra López-Lavalle Luis Augusto (2018). Population structure of wild and cultivated plants shows hierarchical organization of cassava germplasm diversity. In Proceedings Plant and Animal Genome XXVI Conference, 2018 PAG, San Diego.

South Green members (2016). The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology, December 2016, 7-8, pp.6-9.

Anestis Gkanogiannis, Thomas Brüls (2016). A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes. BMC Bioinformatics 17(1):311, August 2016, Aug 19;17(1):311.